02/12/2020 – AI3SD Winter Seminar Series: Robots, AI and NLP in Drug Discovery

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This seminar forms part of the AI3SD Online Seminar Series that will run across the winter (from November 2020 to April 2021). This seminar will be run via zoom, when you register on Eventbrite you will receive a zoom registration email alongside your standard Eventbrite registration email. Where speakers have given permission to be recorded, their talks will be made available on our AI3SD YouTube Channel. The theme for this seminar is Robots, AI and NLP in Drug Discovery.

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18/11/2020 – AI3SD Winter Seminar Series: Topology and Applications in Chemistry

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This seminar forms part of the AI3SD Online Seminar Series that will run across the winter (from November 2020 to April 2021). This seminar will be run via zoom, when you register on Eventbrite you will receive a zoom registration email alongside your standard Eventbrite registration email. Where speakers have given permission to be recorded, their talks will be made available on our AI3SD YouTube Channel. The theme for this seminar is Topology and Applications in Chemistry.Β 

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09/09/2020 – AI3SD Online Seminar Series: Using Artificial Intelligence to Optimise Small-Molecule Drug Design – Dr Nathan Brown

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he concept of in silico molecular design goes back decades and has a long history of published approaches using many different algorithms and models. Major challenges involved in de novo molecular design are manifold, including identifying appropriate molecular representations for optimisation, scoring designed molecules against multiple modelled endpoints, and objectively quantifying synthetic feasibility of the designed structures. Recently, multiobjective de novo design, more recently referred to as generative chemistry, has had a resurgence of interest. This renaissance has highlighted a step-change in successful applications of such methods. This presentation will review the development of de novo design methods over the years including the author’s original work in this area from the early 2000s, to recent approaches that show great promise. Through this review, improvements in important components of de novo design, including machine learning model predictions and automated synthesis planning, will also be presented.

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04/09/2020 – AI3SD Online Seminar Series: Machine Learning for Early Stage Drug Discovery – Professor Charlotte Deane

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Professor Charlotte Deane from the University of Oxford speaks about some of the work her research group have done on Machine Learning for Early Stage Drug Discovery to give a flavour of the different kinds of approaches they have been looking at. These run from predicting whether molecules will bind or not bind to a given protein target, to trying to remove biases from that kind of work, to finally how do we generate novel molecules in the protein binding sites.Β 

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04/09/2020 – AI3SD Online Seminar Series: Machine Learning for Early Stage Drug Discovery – Professor Charlotte Deane

https://www.youtube.com/watch?v=GY0myVuhrCo&t=14s&ab_channel=AI4ScientificDiscovery Abstract: Professor Charlotte Deane from the University of Oxford speaks about some of the work her research group have done on Machine Learning for Early Stage Drug Discovery to…

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05/08/2020 – AI3SD Online Seminar Series: Dimensionality in chemistry: using multidimensional data for machine learning – Dr Ella Gale

https://www.youtube.com/watch?v=NhR7xWlAO4g&ab_channel=AI4ScientificDiscovery Abstract: In the last hundred years mankind has fully absorbed the idea of multi-dimensional space, starting with 4D space time. Due to the increase in computational power, scientists can…

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05/08/2020 – AI3SD Online Seminar Series: Dimensionality in chemistry: using multidimensional data for machine learning – Dr Ella Gale

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In the last hundred years mankind has fully absorbed the idea of multi-dimensional space, starting with 4D space time. Due to the increase in computational power, scientists can now manipulate molecules in 4D (3D vibrating molecules in VR) and work with multidimensional datasets, which are needed to utilize big data and machine learning. However, our intuition from 3D space can fall down when dealing with higher dimensions and a lack of intuition can lead to mistakes in analysis. In this talk I will discuss how to think about the best dimensional space to use to describe chemical problems, how multi-dimensional space is different, techniques for using it and analysing the outputs of machine learning.

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15/07/2020 – AI3SD Online Seminar Series: InChI: measuring the molecules – Professor Jonathan Goodman

https://www.youtube.com/watch?v=B881b5BasnU&ab_channel=AI4ScientificDiscovery Interview: Prior to this seminar, AI3SD interviewed Jonathan. This interview can be found here: https://eprints.soton.ac.uk/442343/ Abstract: The IUPAC international chemical identifier, InChI, provides a way to name molecules. It is defined…

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15/07/2020 – AI3SD Online Seminar Series: InChI: measuring the molecules – Professor Jonathan Goodman

The IUPAC international chemical identifier, InChI, provides a way to name molecules. It is defined by an open algorithm that transforms molecular structures into unique strings of text. Each molecule should have exactly one InChI, and each InChI should correspond to exactly one molecule. This property makes it a useful tool in the management of chemical information, and it is widely used. The InChI Trust and IUPAC are continuing to work on developing the standard and on creating new tools which are built on the InChI. This talk will outline how the InChI is used now, and how this may develop in the future.

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